• Rodrigues AS, Chaves I, Costa BV, Lin Y-C, Lopes S, Milhinhos A, Van de Peer Y, Miguel CM (2019) Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos. Scientific Reports, 9: 11327. doi: 10.1038/s41598-019-47789-y
• Ramos AM, Usié A, Barbosa P, Barros PM, Capote T, Chaves I, Simões F, Abreu I, Carrasquinho I, Faro C, Guimarães J, Mendonça D, Nóbrega F, Rodrigues L, Saibo N, Varela MC, Egas C, Matos J, Miguel CM, Oliveira MM, Ricardo CP, Gonçalves S (2018) The draft genome sequence of cork oak. Sci. Data 5:180069 doi: 10.1038/sdata.2018.69
• Rodrigues AS, de Vega JJ, Miguel CM (2018) Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos. BMC Plant Biology, doi: DOI: 10.1186/s12870-018-1564-2
• Chaves I, Costa B, Rodrigues AS, Bohn A, Miguel CM (2017) miRPursuit – a pipeline for automated analyses of small RNAs in model and non-model plants. FEBS Letters DOI: 10.1002/1873-3468.12746
• Miguel A, Milhinhos A, Novák O, Jones B, Miguel CM (2016) The SHORT-ROOT-like gene PtSHR2B is involved in Populus phellogen activity. Journal of Experimental Botany 67: 1545-55. DOI:10.1093/jxb/erv547.

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