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Sara C. Madeira

Contactos

Departamento de Informática

Sala/Gabinete 6.3.19

Telefone Direto 217500719
Email sacmadeira@ciencias.ulisboa.pt
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Carreira Docente Universitário
Categoria Professor Associado

Currículo Resumido

SARA C. MADEIRA is an Associate Professor at the Department of Informatics of the Faculty of Sciences of the University of Lisbon since February 2017, where she teaches courses on Data Mining, Machine Learning, Foundations of Data Science, and Intelligent Systems. She is also a Senior Researcher at LASIGE, where she is a member of the Data and Systems Intelligence and Health and Biomedical Informatics research lines.

From June 2009-February 2017 she was an Assistant Professor at the Computer Science and Engineering department at Instituto Superior Técnico (IST), University of Lisbon. She was also a senior researcher at INESC-ID, Lisbon, where she received the INESC-ID Young Research Award in 2013.

She received her PhD degree in Computer Science and Engineering at IST in 2008, her MSc degree in Computer Science and Engineering at IST in 2002, and graduated in Matemática-Informática at Universidade da Beira Interior (UBI), in 2000. She was a Lecturer and an Assistant Professor at the Informatics Department of UBI, from 2002-2008 and 2008-2009, respectively.

Her research interests include machine learning, data mining, bioinformatics and biomedical informatics. In this context, she was the PI of NEUROCLINOMICS – Understanding NEUROdegenerative diseases through CLINical and OMICS data (PTDC/EIA-EIA/111239/2009), a research project embracing the challenges of studying complex diseases and developing efficient and effective mining algorithms for biomedical data, using Amyotrophic Lateral Sclerosis and Alzheimer’s disease as case studies. Following this project, she is currently the PI of NEUROCLINOMICS2 – Unravelling Prognostic Markers in NEUROdegenerative diseases through CLINical and OMICS data integration (PTDC/EEI-SII/1937/2014).

She co-chaired the 14th and 15th International Workshop on Data Mining in Bioinformatics (BIOKDD’15 and BIOKDD'16), held in conjunction with ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD ’15 and SIGKDD'16), the premier forum for data mining researchers.

Her survey on Biclustering Algorithms for Biological Data Analysis was considered an ESI Hot Paper in Computer Science in November 2006.

She was on sabbatical leave at the Biocomputing group – University of Bologna from March 2015 to July 2016. From Setember 2015 to June 2016 she was an EURIAS Junior Fellow at the Istituti di Studi Avanzate in Bologna.


Interesses Científicos

Machine Learning. Data Mining. Bioinformatics. Biomedical Informatics.


Scientific Interests

Machine Learning. Data Mining. Bioinformatics. Biomedical Informatics.


Publicações selecionadas
  • Rui Henriques and Sara C. Madeira, BicPAMS: Software for Biological Data Analysis with Pattern-based Biclustering, BMC Bioinformatics, 18(82), Fev. 2017, BioMed Central.
  • André Carreiro and Pedro M. T. Amaral and Susana Pinto and Pedro Tomás and Mamede de Carvalho and Sara C. Madeira, Prognostic Models based on Patient Snapshots and Time Windows: Predicting Disease Progression to Assisted Ventilation in Amyotrophic Lateral Sclerosis, Journal of Biomedical Informatics, 58(), pp. 133-144, Nov. 2015, Elsevier .
  • Rui Henriques and Claudia Antunes and Sara C. Madeira, A Structured View on Pattern Mining-based Biclustering, Pattern Recognition, 48(12), pp. 3941-3958, Dec. 2015, Elsevier
  • Sara C. Madeira and Miguel C. Teixeira and Isabel Sá Correia and Arlindo L. Oliveira, Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithm, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7(1), pp. 153-165, Jan. 2010, IEEE/ACM.
  • Sara C. Madeira and Arlindo L. Oliveira, Biclustering algorithms for biological data analysis: a survey, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1(1), pp. 24-45, Jan. 2004, IEEE/ACM.